| Scene | Title |
|---|---|
| 1 | Trinity's In |
| 2 | Trust Me |
| 3 | Upgrades |
| 4 | Zion |
| 5 | Matter of Time |
| 6 | Homecomings |
| 7 | We Are Still Here |
| 8 | Celebrating Humanity |
| 9 | Smith Will Suffice |
| 10 | What Is Control? |
| 11 | Summoned |
| 12 | Seraph |
| 13 | The Oracle |
| 14 | Swarm of Smiths |
| 15 | Sticking It to Them |
| 16 | The Volunteer |
| 17 | Taste of Merovingian |
| 18 | Persephone's Kiss |
| 19 | Unlocking the Keymaker |
| 20 | Blade Leapers |
| 21 | Twin Trouble |
| 22 | Freeway Entrance |
| 23 | Cross-Vehicular Traffic |
| 24 | Biker Girl |
| 25 | Trucks Amuck |
| 26 | The Reason We're Here |
| 27 | Sacrifice and Sabotage |
| 28 | So Many of Me |
| 29 | The Architect |
| 30 | The One's Function |
| 31 | Neo's Choice |
| 32 | Not Letting Go |
| 33 | Bomb's Target |
| 34 | Feeling the Enemy |
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